Similarity matrix:
A similarity matrix is a matrix of scores which express the similarity between two data points. Similarity matrices are strongly related to their counterparts, distance matrices and substitution matrices. This example shows the expression signature similarity matrix. In the upper-right triangle region, dark red colors indicate high similarity between signatures associated with two contrasts (indicated by row and column labels). The binary coding in the lower-left triangle region indicates whether signatures associated with two contrasts exhibit a significant level of similarity. The statistical procedure used to evaluate similarity is described in the Methods section.
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